Barcoding

Help on BioloMICSNet

How to search our databases

The BioloMICSNet Software facilitates interrogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

The following link : BioloMICS Search will redirect you to the Search page

Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the performance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirect you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated performance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirect you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.fungalbarcoding.org/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.fungalbarcoding.org/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

Export database description
- Export to Excel
- Export to Word

Information details on Database : Barcoding

Fields description for Layout : Fungal barcodes

Field Caption	Field Name	Field Code	Field type
Taxonomy
	Species name	E363	E : Text, administrative field
	Genus	E494	E : Text, administrative field
	Family	E364	E : Text, administrative field
	Order	E365	E : Text, administrative field
	Class	E366	E : Text, administrative field
	Subphylum	E474	E : Text, administrative field
	Phylum	E367	E : Text, administrative field
	Type information	E381	E : Text, administrative field
Geographic origin
	Locality	E370	E : Text, administrative field
	State	E369	E : Text, administrative field
	Country	E368	E : Text, administrative field
	Latitude, longitude where collected	E371	L : GIS Location (latitude, longitude, altitude, precision)
Strain details
	Collection date	H372	H : DateTime (YYYYMMDDHHmmss)
	Collection date	E472	E : Text, administrative field
	Collected by	E373	E : Text, administrative field
	Identified by	E374	E : Text, administrative field
	Submitted by	E375	E : Text, administrative field
	Herbarium/Culture Collection	E376	E : Text, administrative field
	Additional isolate numbers	E377	E : Text, administrative field
	Substrate of isolation	E378	E : Text, administrative field
	Host	E379	E : Text, administrative field
	Publications	E380	E : Text, administrative field
	Notes	E382	E : Text, administrative field
	Owner temp	E478	E : Text, administrative field
	Comment curator	E479	E : Text, administrative field
Molecular data
ITS
	ITS	NLink390	NLink : Link to Sequence
	Original ITS abi files	FLink397	FLink : Link to File
	ITS problems	T438	T : Discrete data, 15 combinations of 4 independant states
LSU
	LSU	NLink392	NLink : Link to Sequence
	Original LSU abi files	FLink399	FLink : Link to File
	LSU problems	T440	T : Discrete data, 15 combinations of 4 independant states
SSU
	SSU	NLink391	NLink : Link to Sequence
	Original SSU abi files	FLink398	FLink : Link to File
	SSU problems	T439	T : Discrete data, 15 combinations of 4 independant states
RPB1
	RPB1	NLink393	NLink : Link to Sequence
	Original RPB1 abi files	FLink400	FLink : Link to File
	RPB1 problems	T441	T : Discrete data, 15 combinations of 4 independant states
RPB2
	RPB2	NLink394	NLink : Link to Sequence
	Original RPB2 abi files	FLink401	FLink : Link to File
	RPB2 problems	T442	T : Discrete data, 15 combinations of 4 independant states
MCM7
	MCM7	NLink395	NLink : Link to Sequence
	Original MCM7 abi files	FLink402	FLink : Link to File
	MCM7 problems	T443	T : Discrete data, 15 combinations of 4 independant states

Examples of hyperlinks for Table Fungal barcodes in Database Barcoding

Example 1: Record #1 [D98121301], Display all Fields

http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'D98121301' , Display all Fields, Exact Match Searching

http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Name=D98121301&Fields=All&ExactMatch=T

Example 3: Record Name containing 'D98121301' , Display all Fields, Non Exact Match Searching

http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Name=D98121301&Fields=All&ExactMatch=F

Example 4: Record Name containing 'NLS0201' , Display Field 'E363' (Species name), Non Exact Match Searching

http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Name=NLS0201&Fields=E363&ExactMatch=F

Example 5: Record Name is 'NLS0201' , Display Field 'E363' (Species name) and 'T443' (MCM7 problems) , Exact Match Searching

http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Name=NLS0201&Fields=E363&Fields=T443&ExactMatch=T

Contact(s) for Database : Barcoding

The following link : BioloMICS Contact information will redirect you to the BioloMICS Contact information page

Search Service

Click here for full description.

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BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Further, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.