Gherbawy Y, Voigt K, 2010. Molecular identification of fungi. Springer Verlag, Berlin, Heidelberg, New York, pp501, 1st edition 15 April 2010. ISBN-10:9783642050411 ISBN-13: 978-3642050411 ASIN: 3642050417.
Begerow D, Nilsson H, Unterseher M, Maier W, 2010. Current state and perspectives of fungal DNA barcoding and rapid identification procedures. Applied Microbiology and Biotechnology 87, 99-108.
Brock PM, Doring H, Bidartondo MI, 2009. How to know unknown fungi: the role of a herbarium. New Phytologist 181, 719-724.
Zhoa P, Luo J, Zhuang W-Y. 2010. Practice towards DNA barcoding of the nectriaceous fungi. Fungal Diversity DOI 10.1007/s13225-010-0064-y
Eberhardt U. 2010. A constructive step towards selecting a DNA barcode for fungi. New Phytologist 187: 265-268.
Rossman AY. 2007. Report of the Planning Workshop for All Fungi DNA Barcoding. Inoculum 58(6): 1-5.
Seifert KA. 2008. Integrating DNA barcoding into the mycological sciences. Inoculum 59(6): 2-6 AND Persoonia 21: 162- 166.
Seifert KA. 2009. Progress towards DNA barcoding the fungi. Molecular Ecology Resources 9 (suppl. 1): 83-89.
Fungal Barcoding Publications on cox1
Chen W, Seifert KA, Levesque CA. 2009. A high density COX1 barcode oligonucleotide array for identification and detection of species of Penicillium subgenus Penicillium. Molecular Ecology Resources 9 (suppl. 1): 114-129.
Nguyen HDT, Seifert KA. 2008. Description and DNA barcoding of three new Leohumicola species from soil in South Africa and the United States. Persoonia 21: 57-69.
Gilmore S, Gräfenhan T, Louis-Seize G, Seifert KA. 2009. Multiple copies of cytochrome oxidase 1 in species of the fungal genus Fusarium. Molecular Ecology Resources 9 (suppl. 1): 90-98.
Santamaria M, Vicario S, Pappada G, Scioscia G, Scazzocchio C, Saccone C. 2009. Towards barcode arkers in Fungi: an intron map of Ascomycota mitochondria. BMC Bioinformatics 10(Suppl. 6): S15.
Seifert KA, Samson RA, DeWaard JR, Houbraken J, Levesque CA, Moncalvo JM, Louis-Seize G, Hebert PD, 2007. Proc. Nat. Acad. Sci. 104: 3901-3906.
Vialle A, Feau N, Allaire M, Didukh M, Martin F, Moncalvo J-M, Hamelin RC. 2009. Evaluation of mitochondrial genes as DNA barcode for Basidiomycota. Mol. Ecol. Res. 9 (suppl. 1): 99-113.
Xiang JM, Hickey DA. 2007. Assessing the effect of varying sequence length on DNA barcoding of fungi. Mol. Ecol. Notes 7: 365-373.
Dentinger BTM, Didukh MY, Moncalvo J-M. 2011. Comparing COI and ITS as DNA Barcode Markers for Mushrooms and Allies (Agaricomycotina). PLoS ONE 6(9): e25081. doi:10.1371/journal.pone.0025081
Articles on ITS for Fungi
Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P, Kauserud H. 2010. ITS as DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol. 10(1):189
Kelly LJ, Hollingsworth PM, Coppins BJ, Ellis CJ, Harrold P, Tosh J, Yahr R, 2011. DNA barccoding of lichenized fungi demonstrates high identification success in a floristic context. New Phytologist doi: 10.1111/j.1469-8137.2011.03677.x
Nilsson RH, Ryberg M, Abarenkov K, Sjokvist E, Kristiansson E, 2009. The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. Fems Microbiology Letters 296, 97-101.
Seena S, Pascoal C, Marvanová, Cássio F. 2010. DNA barcoding of fungi: a case study using ITS sequences for identifying aquatic hyphomycete species. Fungal Diversity 44: 77-87.
Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson K-H, Kõljalg U. 2006. Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective. PLoS ONE, 1(1), e59.
Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N. 2008. Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evolutionary Bioinformatics 4: 193–201.
Stockinger H, Kruger M, Schußler A. 2010. DNA barcoding of arbuscular mycorrhizal fungi. New Phytologist 187: 461– 474.
Other genes
Zuydam van NR, Paciura D, Jacobs K, Wingfield MJ, Coetzee MPA, Wingfield BD. 2010. Barcoding and microcoding using "identiprimers" with Leptographium species. Mycologia 102(6): 1274-1287.
Schmitt I, Crespo A, Divakar PK, Fankhauser JD, Herman-Sackett E, Kalb K, Nelsen MP, Nelson NA, Rivas-Plata E, Shimp AD et al. 2009. New primers for promising single-copy genes in fungal phylogenetics and systematics. Persoonia 23: 35–40.
Other important barcoding articles
Chen SL, Yao H, Han JP, Liu C, Song JY, Shi LC, Zhu YJ, Ma XY, Gao T, Pang XH, Luo K, Li Y, Li XW, Jia XC, Lin YL, Leon C, 2010. Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species. PLoS ONE 5
Chase MW, Fay MF, 2009. Barcoding of Plants and Fungi. Science 325, 682-683.
Hollingsworth PM, Forrest LL, Spouge JL, Hajibabaei M, Ratnasingham S, van der Bank M, Chase MW, Cowan RS, Erickson DL, Fazekas AJ, Graham SW, James KE, Kim KJ, Kress WJ, Schneider H, van AlphenStahl J, Barrett SCH, van den Berg C, Bogarin D, Burgess KS, Cameron KM, Carine M, Chacon J, Clark A, Clarkson JJ, Conrad F, Devey DS, Ford CS, Hedderson TAJ, Hollingsworth ML, Husband BC, Kelly LJ, Kesanakurti PR, Kim JS, Kim YD, Lahaye R, Lee HL, Long DG, Madrinan S, Maurin O, Meusnier I, Newmaster SG, Park CW, Percy DM, Petersen G, Richardson JE, Salazar GA, Savolainen V, Seberg O, Wilkinson MJ, Yi DK, Little DP, Grp CPW, 2009. A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 106, 12794-12797.
Hebert PDN, Cywinska A, Ball SL, de Waard JR. 2003. Biological identifications through DNA barcodes. Proc. R. Soc. B, 270: 313–321