| primer name |
sequence |
|
Lab/commenter |
Tax group |
| ITS |
|
|
|
|
| ITS1 |
5'-TCCGTAGGTGAACCTGCGG-3' |
forward |
all |
all |
| ITS 1F |
5'-CTTGGTCATTTAGAGGAAGTAA-3' |
forward |
all |
all |
| ITS4 |
5'-TCCTCCGCTTATTGATATGC-3' |
reverse |
all |
all |
| ITS4BR |
5'-TCAACAGACTTGTACATGGTCC-3' |
reverse |
Hamelin |
|
| ITS4BR2 |
5'-GGATTATCACCCTCAATGAT-3' |
reverse |
Hamelin |
|
| ITS3R2 |
5'-AAGGTACACCTGTTTGAGTGTC-3' |
forward |
Hamelin |
|
| ITS2R2 |
5'-GACACTCAAACAGGTGTACCTT-3' |
reverse |
Hamelin |
|
| ITS5 |
5'-GGAAGTAAAAGTCGTAACAAGG-3' |
forward |
Seifert |
|
| ITS3R3 |
5'-CACATCGATGAAGAACACAGT-3' |
forward |
Hamelin |
|
| 5.8S |
5'-CGCTGCGTTCTTCATCG-3' |
forward |
Moncalvo |
|
| 5.8SR |
5'-TCGATGAAGAACGCAGCG-3' |
reverse |
Moncalvo |
|
| UN-UP18S42 |
5'-CGTAACAAGGTTTCCGTAGGTGAAC-3' |
forward |
Levesque |
|
| UN-LO28S22` |
5'-GTTTCTTTTCCTCCGCTTATTGATATG-3' |
reverse |
Levesque |
|
| LSU |
|
|
|
|
| LR0R |
5'-ACCCGCTGAACTTAAGC-3' |
forward |
|
|
| LR5 |
5'-TCCTGAGGGAAACTTCG-3' |
reverse |
|
|
| LR16 |
5'-TTCCACCCAAACACTCG-3' |
reverse |
|
|
| SSU |
|
|
|
|
| SR1R |
5'-TACCTGGTTGATQCTGCCAGT-3' |
forward |
James |
Chytrids/Zygos, all |
| NS1 |
5'-GTAGTCATATGCTTGTCTC-3' |
forward |
all |
Ascomycota, all |
| NS4 |
5'-CTTCCGTCAATTCCTTTAAG-3' |
reverse |
all |
Ascomycota, all |
|
|
|
|
|
| PNS1 |
5’-CCAAGCTTGAATTCGTAGTCATATGCTTGTC-3’ |
forward |
Hibbett |
Basidiomycota |
| NS41 |
5’-CCCGTGTTGAGTCAAATTA-3’ |
reverse |
Hibbett |
Basidiomycota |
| RPB1 |
|
|
|
|
| RPB1-Af, RPB1-Ac |
5’-GARTGYCCDGGDCAYTTYGG-3’ |
forward |
Sung, Matheny |
all |
| RPB1-Cr |
5’-CCNGCDATNTCRTTRTCCATRTA-3’ |
reverse |
Sung, Matheny |
all |
| RPB2 |
|
|
|
|
| fRPB2-5F |
GAYGAYMGWGATCAYTTYGG |
forward |
Matheny |
all |
| RPB2-7R |
CCCATWGCYTGCTTMCCCAT |
reverse |
Sung |
all |
| bRPB2-7.1R |
5'-CCCATRGCYTGYTTMCCCATDGC-3' |
reverse |
Matheny |
Basidiomycota |
| MCM7 |
|
|
|
|
| Mcm7-709for |
5’-ACIMGIGTITCVGAYGTHAARCC-3’ |
forward |
Schmitt |
all |
| Mcm7-1348rev |
5’-GAYTTDGCIACICCIGGRTCWCCCAT-3’ |
reverse |
Schmitt |
all |
| Mcm7-1447rev |
5’-CATIACIGCIGCIGTRAGRCC-3’ |
reverse |
Schmitt |
all |